Mathematical Modelling and Scientific Computing in the Biosciences II: Spatial-temporal models in biology
James Lu
Email: james.lu@oeaw.ac.at
Office: HF 113
From October 2008 – February 2009
Lectures: Tues 13:45-15:15, MZ
005B
Computer room: HF 107
reaction-diffusion equations: qualitative behaviors, solution methods, stability analysis
applications to: morphogenesis, calcium signalling, developmental biology
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Mathematical Biology II J. D. Murray, Springer 2002.
Computational Cell Biology, C. P. Fall, E. S. Maryland, J. M. Wagner, J. J. Tyson, editors. Springer, 2002.
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Computer assignments, using Mathematica and Matlab
Grade: 2 assignments + 1 exam
Lecture slides in Mathematica notebook format (also viewable using the Mathematica Player):
October 7: Lecture1.nb
October 14: no lecture; next lecture date is 21 October
October 21: Lecture2.nb
October 28: Lecture3.nb
Nakamura+Hamada paper
Nakamura+Hamada supplement
November 4: Lecture4.nb
Houchmandzadeh+Wieschaus+Leibler paper
November 11: Lecture5.nb
Lander+Nie+Wan paper
November 18: Lecture6.nb
November 25: Lecture7.nb
December 2: Lecture8.nb
NOTE: there will not be lectures the next 2 weeks; please work on Exercise 2
January 13: Lecture9.nb
January 20: Lecture10.nb
January 27: MEET IN COMPUTER ROOM HF107
Due 7 November: Exercise1.nb
Supplementary paper: Callahan+Knobloch.pdf; solution: Exercise1_Solution_Kolmbauer.nb
Due 13 January 2009: Exercise2.nb
Due 16 February 2009:Exercise3_Question.nb
