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    <notes>
      <body xmlns="http://www.w3.org/1999/xhtml"><p>This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2006 The BioModels Team.<br></br> For more information see the <a href="http://www.ebi.ac.uk/biomodels/legal.html">terms of use</a>.</p></body>
    </notes>
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<vCard:Family>Shapiro</vCard:Family>
<vCard:Given>Bruce</vCard:Given>
</vCard:N>
<vCard:EMAIL>bshapiro@jpl.nasa.gov</vCard:EMAIL>
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<vCard:Orgname>NASA Jet Propulsion Laboratory</vCard:Orgname>
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<vCard:N rdf:parseType="Resource">
<vCard:Family>Le Novere</vCard:Family>
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<vCard:EMAIL>lenov@ebi.ac.uk</vCard:EMAIL>
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<vCard:Orgname>EMBL-EBI</vCard:Orgname>
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<dcterms:W3CDTF>2005-06-29T11:27:52</dcterms:W3CDTF>
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<dcterms:W3CDTF>2007-01-14T16:33:34</dcterms:W3CDTF>
</dcterms:modified>
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    <listOfUnitDefinitions>
      <unitDefinition metaid="metaid_0000003" id="substance" name="nanomole (default)">
        <listOfUnits>
          <unit kind="mole" scale="-9" multiplier="1" offset="0"/>
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      <unitDefinition metaid="metaid_0000005" id="time" name="hour (default)">
        <listOfUnits>
          <unit kind="second" multiplier="3600" offset="0"/>
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    </listOfUnitDefinitions>
    <listOfCompartments>
      <compartment metaid="metaid_0000012" id="Cell" name="cytoplasm" size="1">
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      </compartment>
      <compartment metaid="metaid_0000049" id="compartment_0000002" name="nucleus" size="1">
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      </compartment>
    </listOfCompartments>
    <listOfSpecies>
      <species metaid="metaid_0000013" id="P0" name="PER Protein (unphosphorylated)" compartment="Cell" initialConcentration="0">
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      </species>
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      </species>
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      </species>
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      </species>
      <species metaid="metaid_0000020" id="Cn" name="Nuclear PER-TIM Cmp" compartment="compartment_0000002" initialConcentration="0">
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      </species>
      <species metaid="metaid_0000021" id="Mp" name="PER mRNA" compartment="Cell" initialConcentration="0">
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</rdf:RDF>
</annotation>

      </species>
      <species metaid="metaid_0000022" id="Mt" name="TIM mRNA" compartment="Cell" initialConcentration="0">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
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      </species>
    </listOfSpecies>
    <listOfParameters>
      <parameter metaid="metaid_0000008" id="Pt" name="Total Per" constant="false"/>
      <parameter metaid="metaid_0000009" id="Tt" name="Total Tim" constant="false"/>
      <parameter metaid="metaid_0000010" id="V_mT" value="0.7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
           <p>V_mT=.7 (physiological oscillations); 0.28 (chaos); .4 or .99 (biorhythmicity example)</p>
         </body>
        </notes>
      </parameter>
      <parameter metaid="metaid_0000011" id="V_dT" value="2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
           <p>V_dT=2 (physiological oscillations); 4.8 (chaos); 3.8 or 2 (biorhythmicity example)</p>
         </body>
        </notes>
      </parameter>
    </listOfParameters>
    <listOfRules>
      <assignmentRule metaid="metaid_0000023" variable="Pt">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <plus/>
            <ci> CC </ci>
            <ci> Cn </ci>
            <ci> P0 </ci>
            <ci> P1 </ci>
            <ci> P2 </ci>
          </apply>
        </math>
      </assignmentRule>
      <assignmentRule metaid="metaid_0000024" variable="Tt">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <plus/>
            <ci> CC </ci>
            <ci> Cn </ci>
            <ci> T0 </ci>
            <ci> T1 </ci>
            <ci> T2 </ci>
          </apply>
        </math>
      </assignmentRule>
    </listOfRules>
    <listOfReactions>
      <reaction metaid="metaid_0000025" id="P0_to_P1" name="First Phosphorylation of PER" reversible="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>This phosphorylation is triggered by the protein product of the gene <em>double-time</em> (DBT, <a href="http://www.uniprot.org/entry/O76324">DCO_DROME</a>). Not explicitely represented in the model.</p>
          </body>
        </notes>
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000025">
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<rdf:Bag>
<rdf:li rdf:resource="http://www.ebi.ac.uk/IntEnz/#2.7.11.1"/>
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</annotation>

        <listOfReactants>
          <speciesReference species="P0"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="P1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> V_1P </ci>
                <ci> P0 </ci>
              </apply>
              <apply>
                <plus/>
                <ci> K1_P </ci>
                <ci> P0 </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="K1_P" value="2"/>
            <parameter id="V_1P" value="8"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000026" id="T0_to_T1" name="First Phosphorylation of TIM" reversible="false">
        <annotation>
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        <listOfReactants>
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        </listOfReactants>
        <listOfProducts>
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        <kineticLaw>
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            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> V_1T </ci>
                <ci> T0 </ci>
              </apply>
              <apply>
                <plus/>
                <ci> K_1T </ci>
                <ci> T0 </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="K_1T" value="2"/>
            <parameter id="V_1T" value="8"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000027" id="P1_to_P0" name="Dephosphorylation of PER (1st P)" reversible="false">
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</annotation>

        <listOfReactants>
          <speciesReference species="P1"/>
        </listOfReactants>
        <listOfProducts>
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        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> V_2P </ci>
                <ci> P1 </ci>
              </apply>
              <apply>
                <plus/>
                <ci> K_2P </ci>
                <ci> P1 </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="K_2P" value="2"/>
            <parameter id="V_2P" value="1"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000028" id="T1_to_T0" name="Dephosphorylation of TIM (1st P)" reversible="false">
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        <listOfReactants>
          <speciesReference species="T1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="T0"/>
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        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> V_2T </ci>
                <ci> T1 </ci>
              </apply>
              <apply>
                <plus/>
                <ci> K_2T </ci>
                <ci> T1 </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="K_2T" value="2"/>
            <parameter id="V_2T" value="1"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000029" id="P1_to_P2" name="Second Phosphorylation of PER" reversible="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>This phosphorylation is triggered by the protein product of the gene <em>double-time</em> (DBT, <a href="http://www.uniprot.org/entry/O76324">DCO_DROME</a>). Not explicitely represented in the model.</p>
          </body>
        </notes>
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000029">
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<rdf:li rdf:resource="http://www.ebi.ac.uk/IntEnz/#2.7.11.1"/>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0006468"/>
</rdf:Bag>
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</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="P1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="P2"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> V_3P </ci>
                <ci> P1 </ci>
              </apply>
              <apply>
                <plus/>
                <ci> K_3P </ci>
                <ci> P1 </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="K_3P" value="2"/>
            <parameter id="V_3P" value="8"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000030" id="T1_to_T2" name="Second Phosphorylation of TIM" reversible="false">
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        <listOfReactants>
          <speciesReference species="T1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="T2"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> V_3T </ci>
                <ci> T1 </ci>
              </apply>
              <apply>
                <plus/>
                <ci> K_3T </ci>
                <ci> T1 </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="K_3T" value="2"/>
            <parameter id="V_3T" value="8"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000031" id="P2_to_P1" name="Dephosphorylation of PER (2nd P)" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000031">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.ebi.ac.uk/IntEnz/#3.1.3.16"/>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0006470"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="P2"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="P1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> V_4P </ci>
                <ci> P2 </ci>
              </apply>
              <apply>
                <plus/>
                <ci> K_4P </ci>
                <ci> P2 </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="K_4P" value="2"/>
            <parameter id="V_4P" value="1"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000032" id="T2_to_T1" name="Dephosphorylation of TIM (2nd P)" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000032">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.ebi.ac.uk/IntEnz/#3.1.3.16"/>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0006470"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="T2"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="T1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> V_4T </ci>
                <ci> T2 </ci>
              </apply>
              <apply>
                <plus/>
                <ci> K_4T </ci>
                <ci> T2 </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="K_4T" value="2"/>
            <parameter id="V_4T" value="1"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000033" id="P0_deg" name="PER deg" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000033">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0030163"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="P0"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> Cell </ci>
              <ci> k_d </ci>
              <ci> P0 </ci>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_d" value="0.01"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000034" id="T0_deg" name="TIM deg" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000034">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0030163"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="T0"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> Cell </ci>
              <ci> k_d </ci>
              <ci> T0 </ci>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_d" value="0.01"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000035" id="P1_deg" name="PER-1 deg" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000035">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0030163"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="P1"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> Cell </ci>
              <ci> k_d </ci>
              <ci> P1 </ci>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_d" value="0.01"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000036" id="T1_deg" name="TIM-1 deg" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000036">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0030163"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="T1"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> Cell </ci>
              <ci> k_d </ci>
              <ci> T1 </ci>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_d" value="0.01"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000037" id="P2_deg" name="PER-2 deg" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000037">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0030163"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="P2"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <plus/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> k_d </ci>
                <ci> P2 </ci>
              </apply>
              <apply>
                <divide/>
                <apply>
                  <times/>
                  <ci> Cell </ci>
                  <ci> V_dP </ci>
                  <ci> P2 </ci>
                </apply>
                <apply>
                  <plus/>
                  <ci> K_dP </ci>
                  <ci> P2 </ci>
                </apply>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_d" value="0.01"/>
            <parameter id="V_dP" value="2"/>
            <parameter id="K_dP" value="0.2"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000038" id="T2_deg" name="TIM-2 deg" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000038">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0030163"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="T2"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <plus/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> k_d </ci>
                <ci> T2 </ci>
              </apply>
              <apply>
                <divide/>
                <apply>
                  <times/>
                  <ci> Cell </ci>
                  <ci> V_dT </ci>
                  <ci> T2 </ci>
                </apply>
                <apply>
                  <plus/>
                  <ci> K_dT </ci>
                  <ci> T2 </ci>
                </apply>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_d" value="0.01"/>
            <parameter id="K_dT" value="0.2"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000039" id="PT_cmp_form" name="PER-TIM cmp form">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000039">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0006461"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="P2"/>
          <speciesReference species="T2"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="CC"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <minus/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> k3 </ci>
                <ci> P2 </ci>
                <ci> T2 </ci>
              </apply>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> k4 </ci>
                <ci> CC </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k3" value="1.2"/>
            <parameter id="k4" value="0.6"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000040" id="PT_cmp_nucl" name="PER-TIM cmp nucl">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000040">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0006606"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="CC"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="Cn"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <minus/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> k1 </ci>
                <ci> CC </ci>
              </apply>
              <apply>
                <times/>
                <ci> compartment_0000002 </ci>
                <ci> k2 </ci>
                <ci> Cn </ci>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k1" value="0.6"/>
            <parameter id="k2" value="0.2"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000041" id="PT_cmp_deg" name="PER-TIM cmp deg (cytosol)" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000041">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0030163"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="CC"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> Cell </ci>
              <ci> k_dC </ci>
              <ci> CC </ci>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_dC" value="0.01"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000042" id="PTnucl_cmp_deg" name="PER-TIM cmp deg (nuclear)" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000042">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0030163"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="Cn"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> compartment_0000002 </ci>
              <ci> k_dN </ci>
              <ci> Cn </ci>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_dN" value="0.01"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000043" id="Mp_prod" name="PER mRNA prod" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000043">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0006355"/>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0009299"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfProducts>
          <speciesReference species="Mp"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="Cn"/>
        </listOfModifiers>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> v_sP </ci>
                <apply>
                  <power/>
                  <ci> K_IP </ci>
                  <ci> n </ci>
                </apply>
              </apply>
              <apply>
                <plus/>
                <apply>
                  <power/>
                  <ci> K_IP </ci>
                  <ci> n </ci>
                </apply>
                <apply>
                  <power/>
                  <ci> Cn </ci>
                  <ci> n </ci>
                </apply>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="v_sP" value="1"/>
            <parameter id="K_IP" value="1"/>
            <parameter id="n" value="4"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000044" id="Mt_prod" name="TIM mRNA prod" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000044">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0006355"/>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0009299"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfProducts>
          <speciesReference species="Mt"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="Cn"/>
        </listOfModifiers>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> V_sT </ci>
                <apply>
                  <power/>
                  <ci> K_IT </ci>
                  <ci> n </ci>
                </apply>
              </apply>
              <apply>
                <plus/>
                <apply>
                  <power/>
                  <ci> K_IT </ci>
                  <ci> n </ci>
                </apply>
                <apply>
                  <power/>
                  <ci> Cn </ci>
                  <ci> n </ci>
                </apply>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="V_sT" value="1"/>
            <parameter id="K_IT" value="1"/>
            <parameter id="n" value="4"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000045" id="P0_prod" name="PER prod" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000045">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0043037"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfProducts>
          <speciesReference species="P0"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="Mp"/>
        </listOfModifiers>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> Cell </ci>
              <ci> k_sP </ci>
              <ci> Mp </ci>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_sP" value="0.9"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000046" id="T0_prod" name="TIM prod" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000046">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0043037"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfProducts>
          <speciesReference species="T0"/>
        </listOfProducts>
        <listOfModifiers>
          <modifierSpeciesReference species="Mt"/>
        </listOfModifiers>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> Cell </ci>
              <ci> k_sT </ci>
              <ci> Mt </ci>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_sT" value="0.9"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000047" id="Mp_deg" name="PER mRNA deg" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000047">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0006402"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="Mp"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <plus/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> k_d </ci>
                <ci> Mp </ci>
              </apply>
              <apply>
                <divide/>
                <apply>
                  <times/>
                  <ci> Cell </ci>
                  <ci> V_mP </ci>
                  <ci> Mp </ci>
                </apply>
                <apply>
                  <plus/>
                  <ci> K_mP </ci>
                  <ci> Mp </ci>
                </apply>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_d" value="0.01"/>
            <parameter id="V_mP" value="0.7"/>
            <parameter id="K_mP" value="0.2"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
      <reaction metaid="metaid_0000048" id="Mt_deg" name="TIM mRNA deg" reversible="false">
        <annotation>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" >
<rdf:Description rdf:about="#metaid_0000048">
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="http://www.geneontology.org/#GO:0006402"/>
</rdf:Bag>
</bqbiol:isVersionOf>
</rdf:Description>
</rdf:RDF>
</annotation>

        <listOfReactants>
          <speciesReference species="Mt"/>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <plus/>
              <apply>
                <times/>
                <ci> Cell </ci>
                <ci> k_d </ci>
                <ci> Mt </ci>
              </apply>
              <apply>
                <divide/>
                <apply>
                  <times/>
                  <ci> Cell </ci>
                  <ci> V_mT </ci>
                  <ci> Mt </ci>
                </apply>
                <apply>
                  <plus/>
                  <ci> K_mT </ci>
                  <ci> Mt </ci>
                </apply>
              </apply>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k_d" value="0.01"/>
            <parameter id="K_mT" value="0.2"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
    </listOfReactions>
  </model>
</sbml>

